PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G134600.1
Common NameB456_005G134600, LOC105794113
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 432aa    MW: 48238.4 Da    PI: 8.5359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G134600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Gorai.005G134600.1 57 YVCEICNQGFQRDQNLQMHRRRH 79
                        9*********************9 PP

2zf-C2H216.72.1e-05134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C+k +  +s++k H++t+
  Gorai.005G134600.1 134 WVCDKCSKAYAVQSDYKAHLKTC 156
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-55679No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035519098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.32E-5129154No hitNo description
SMARTSM0035584134154IPR015880Zinc finger, C2H2-like
SMARTSM0035548161183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLANNSCSSL PSSEPFSCLE NGTTNINKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCDKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACHMGRVIRP ESQGVQLACL SRTASSPSPS NDTNFSTAPC PWPSLALPKT KDAMFLSPTK  240
YHNSPKNALS HNLELQLLTT SNPSEVSVSP KKHDNDPTHL QLSIGSSDIG DKVEYSTVTC  300
THKDASNKSG HHEKQAPQPL RVAMEEKTYA EEARQEAKRQ IEIAEQEFAK AKRIRQQAQA  360
ELEKAQALKD HAVKQINSTI LQITCHACQH QFQARTPPEE NSLVASYISS AVTEGEVEND  420
IQTSLTKATN T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478559.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-156IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A0D2PSK30.0A0A0D2PSK3_G
STRINGPOPTR_0012s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-143C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]